Parental gene:

RPE, ENSDNOG00000003193

Aliases:None
Description:ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_6946:19344..45856(+)


>ENSDNOG00000003193
ATGGCGTCGGGCTGCAAGATCGGCCCATCCATCCTCAACAGCGACCTGGCCAATTTAGGGGCAGAGTGCCTCCGAATGCT
GGACTCCGGGGCCGATTATCTGCACCTGGATGTAATGGACGGGCATTTTGTTCCCAACATCTTTGGTCACCCTGTGGTAG
AAAGTCTCCGAAAGCAGCTAGGCCAGGACCCTTTCTTTGACATGCACATGATGGTGTCCAGGCCAGAACAGTGGGTCAAA
CCAATGGCTGTAGCAGGAGCTAATCAATATACCTTTCATCTCGAAGCTACTGAGAATCCAGGAGCTTTGATTAAAGACAT
TCGGGAGAATGGGATGAAGGTTGGCTTGGCCATCAAACCAGGAACTACAGTTGAGTATTTGGCACCATGGGCTAATCAGA
TAGATATGGCCTTGGTAATGACAGTGGAACCTGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTTCAC
TGGTTGAGGACCCAGTTCCCGTCTTTGGACATAGAGGTCGATGGTGGAGTAGGTCCTGACACTGTCCATAAATGTGCAGA
GGCAGGAGCTAACATGATTGTGTCTGGCAGTGCCATTATGAGGAGCGAAGACTCCAGATCTGTGATCAACCTGTTAAGAA
ATGTTTGCTCAGAAGCTGCTCAGAAACGTTCTCTTGATCGATGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 15 .36 RPM
SRP012922_cerebellum 3 .30 RPM
SRP012922_heart 3 .02 RPM
SRP012922_kidney 7 .94 RPM
SRP012922_liver 6 .97 RPM
SRP012922_lung 5 .65 RPM
SRP012922_quadricep_muscle 1 .04 RPM
SRP012922_spleen 9 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004965 ortholog_one2one 3 retrogenes
Bos taurus ENSBTAG00000047806 ortholog_one2one 2 retrogenes
Canis familiaris ENSCAFG00000013811 ortholog_one2one 3 retrogenes
Choloepus hoffmanni ENSCHOG00000001110 ortholog_one2one 5 retrogenes
Callithrix jacchus ENSCJAG00000010822 ortholog_one2one 2 retrogenes
Equus caballus ENSECAG00000000002 ortholog_one2one 3 retrogenes
Homo sapiens ENSG00000197713 ortholog_one2one 5 retrogenes
Latimeria chalumnae ENSLACG00000002800 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000014127 ortholog_one2one 2 retrogenes
Microcebus murinus ENSMICG00000009953 ortholog_one2one 4 retrogenes
Macaca mulatta ENSMMUG00000010513 ortholog_one2many 2 retrogenes
Monodelphis domestica ENSMODG00000015827 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000007948 ortholog_one2one 2 retrogenes
Nomascus leucogenys ENSNLEG00000007172 ortholog_one2one 3 retrogenes
Oryctolagus cuniculus ENSOCUG00000016995 ortholog_one2one 1 retrogene
Otolemur garnettii ENSOGAG00000002778 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000013132 ortholog_one2many 4 retrogenes
Pteropus vampyrus ENSPVAG00000014452 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000016152 ortholog_one2many 1 retrogene
Ictidomys tridecemlineatus ENSSTOG00000010322 ortholog_one2many 1 retrogene
Tarsius syrichta ENSTSYG00000003304 ortholog_one2one 5 retrogenes
Tursiops truncatus ENSTTRG00000000908 ortholog_one2one 1 retrogene
Vicugna pacos ENSVPAG00000011585 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_789 50.38 57.27
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Download FASTA sequences of all ENSDNOG00000003193 retrocopies