RetrogeneDB ID: | retro_vpac_91 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_170:230607..230989(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSVPAG00000011585 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 94.62 % |
Parental protein coverage: | 56.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG-QDPFFDM |
MASGCKIGPS.LNSDLANLGAECL.MLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG.QDPFFDM | |
Retrocopy | MASGCKIGPSVLNSDLANLGAECLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG<QDPFFDM |
Parental | HMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENG-MKVGLAIKPGTTVEYL |
HMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIREN..MKVGLAIKPGTTV..L | |
Retrocopy | HMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENE<MKVGLAIKPGTTVHRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |