RetrogeneDB ID: | retro_cfam_1596 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:7334846..7335304(-) | ||
Located in intron of: | ENSCAFG00000010242 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSCAFG00000013811 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 62.58 % |
Parental protein coverage: | 67.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQI |
FF.M...VSR.E.WV.P.A...ANQYTFHLE.T..PGALIKD..EN.MKV.LAIK.G.TVEY.A.WANQI | |
Retrocopy | FFGMQRTVSRLEHWVRPVAAVVANQYTFHLEDTKTPGALIKDTWENEMKVRLAIKLGATVEYSATWANQI |
Parental | DMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ-FPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAIMRSD |
D...VM.VEP.FGGQ..MED...KV...R.Q..PSLD.EV....G..T....A..GANM..SGSAIMRS. | |
Retrocopy | DTSSVMPVEPEFGGQQHMEDTVSKVQQCRIQ<VPSLDTEVNVRAGM-TRSVTANIGANMTLSGSAIMRSE |
Parental | DPRSVINLLRNVCSE |
.PRSVINLL...CSE | |
Retrocopy | SPRSVINLLGYICSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 8 .57 RPM |
SRP017611_brain | 0 .00 RPM | 7 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .68 RPM |
SRP017611_liver | 0 .00 RPM | 6 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_815 |
Equus caballus | retro_ecab_446 |