RetrogeneDB ID: | retro_btau_343 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:45619643..45619979(+) | ||
Located in intron of: | ENSBTAG00000015808 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSBTAG00000047806 | ||
Aliases: | None | ||
Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001091548] |
Percent Identity: | 80.7 % |
Parental protein coverage: | 59.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | HFVPNITFGHPVVESLRKQLGQDPFFDM-HMMVSRPEQ-WVKPMAVAGANQYTFHLEATDNPGALIKDIR |
HF..NITFGHPVVESL.KQL.QDPFFD...M.VSRP...WVKPMA.AGAN.Y.FHLEAT.NPGALIKD.. | |
Retrocopy | HFALNITFGHPVVESLQKQLDQDPFFDI<YMKVSRPKK>WVKPMAIAGAN*YMFHLEATENPGALIKDTQ |
Parental | ENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFM |
EN.MKVG.AIKPGT.VEYL.PWANQID.ALVMTVEPGFGGQKFM | |
Retrocopy | ENRMKVGIAIKPGTTVEYLVPWANQIDIALVMTVEPGFGGQKFM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .48 RPM |
ERP005899_muscle | 0 .00 RPM | 9 .13 RPM |
SRP017611_brain | 0 .09 RPM | 5 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .08 RPM |
SRP017611_liver | 0 .00 RPM | 6 .64 RPM |
SRP030211_testis | 0 .02 RPM | 2 .23 RPM |