RetrogeneDB ID: | retro_ecab_562 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 21:8311897..8312182(+) | ||
Located in intron of: | ENSECAG00000021974 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSECAG00000000002 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 61.86 % |
Parental protein coverage: | 51.87 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | FVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENG |
F.P.IT.GHP....L.KQL....FF..HM..SR.E..VK..A.AG.N.Y.FHLEATE.PGA.IKDI.EN. | |
Retrocopy | FIPCITIGHPQI--LQKQLDKNSFFHIHMIFSRTE*QVKTIAIAGTN*YAFHLEATERPGAFIKDI*ENW |
Parental | MKVGLAIKPGTTVEYLAPWANQIDMAL |
MK.GL.IKPGTT.EYL.P..N.IDM.L | |
Retrocopy | MKFGLTIKPGTTIEYLGP*TNLIDMTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 5 .90 RPM |
SRP021940_cerebellum | 0 .00 RPM | 24 .41 RPM |
SRP021940_embryo | 0 .00 RPM | 20 .56 RPM |
SRP021940_placental_villous | 0 .00 RPM | 11 .35 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 14 .08 RPM |
SRP021940_testis | 0 .00 RPM | 17 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3330 |