Parental gene: | RPE, ENSPPYG00000013132 |
| Aliases: | None |
| Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001126655] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 2b:101438559..101459304(+) |
>ENSPPYG00000013132
ATGGCGTCGGGCTGCAAGATTGGCCCGTCCATCCTCAACAGCGACCTGGCCAATTTAGGGGCCGAGTGCCTCCGGATGCT
AGACTCTGGGGCCGATTATCTGCACCTGGATGTAATGGACGGGCATTTTGTTCCCAACATCACCTTTGGTCACCCTGTGG
TAGAAAGCCTTCGAAAGCAGCTAGGCCAGGACCCTTTCTTTGACATGCACATGATGGTGTCCAAGCCAGAACAGTGGGTA
AAGCCAATGGCTGTAGCAGGAGCCAATCAGTACACCTTTCATCTCGAGGCTACTGAGAACCCAGGGGCTTTGATTAAAGA
CATTCGGGAGAATGGGATGAAGGTTGGCCTTGCCATCAAACCAGGAACCTCAGTTGAGTATTTGGCACCATGGGCTAATC
AAATAGATATGGCCTTGGTTATGACAGTGGAACCGGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTT
CACTGGTTGAGGACCCAGTTCCCATCTTTGGATATAGAGGTCGATGGTGGAGTAGGTCCTGACACTGTCCATAAGTGTGC
AGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCCAGATCTGTGATCAACCTATTAA
GAAATGTTTGCTCAGAAGCTGCTCAGAAACGTTCTCTTGATCGATGA
ATGGCGTCGGGCTGCAAGATTGGCCCGTCCATCCTCAACAGCGACCTGGCCAATTTAGGGGCCGAGTGCCTCCGGATGCT
AGACTCTGGGGCCGATTATCTGCACCTGGATGTAATGGACGGGCATTTTGTTCCCAACATCACCTTTGGTCACCCTGTGG
TAGAAAGCCTTCGAAAGCAGCTAGGCCAGGACCCTTTCTTTGACATGCACATGATGGTGTCCAAGCCAGAACAGTGGGTA
AAGCCAATGGCTGTAGCAGGAGCCAATCAGTACACCTTTCATCTCGAGGCTACTGAGAACCCAGGGGCTTTGATTAAAGA
CATTCGGGAGAATGGGATGAAGGTTGGCCTTGCCATCAAACCAGGAACCTCAGTTGAGTATTTGGCACCATGGGCTAATC
AAATAGATATGGCCTTGGTTATGACAGTGGAACCGGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTT
CACTGGTTGAGGACCCAGTTCCCATCTTTGGATATAGAGGTCGATGGTGGAGTAGGTCCTGACACTGTCCATAAGTGTGC
AGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCCAGATCTGTGATCAACCTATTAA
GAAATGTTTGCTCAGAAGCTGCTCAGAAACGTTCTCTTGATCGATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .35 RPM |
| SRP007412_cerebellum | 4 .74 RPM |
| SRP007412_heart | 2 .05 RPM |
| SRP007412_kidney | 11 .30 RPM |
| SRP007412_liver | 5 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004965 | ortholog_one2many | 3 retrogenes | |
| Bos taurus | ENSBTAG00000047806 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000013811 | ortholog_one2many | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001110 | ortholog_one2many | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010822 | ortholog_one2many | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000003193 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000000002 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000197713 | ortholog_one2one | 5 retrogenes | |
| Latimeria chalumnae | ENSLACG00000002800 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000014127 | possible_ortholog | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000009953 | ortholog_one2many | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000010513 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000015827 | ortholog_one2many | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007948 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000007172 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016995 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002778 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000014452 | ortholog_one2many | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000016152 | ortholog_many2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010322 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000003304 | ortholog_one2many | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000000908 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000011585 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_555 | 93.89 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1052 | 95.09 | 71.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1878 | 84.38 | 70.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2340 | 76.62 | 65.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000013132 retrocopies