Parental gene:

ENSSSCG00000016152

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:15:124443425..124459649(+)


>ENSSSCG00000016152
ATGGACGGGCATTTTGTTCCCAACATCACCTTTGGTCACCCTGTGGTAGAAAGCCTCCGAAAGCAGCTAGGCCAGGACCC
CTTCTTTGACATGCACATGATGGTGTCCAGGCCGGAACAGTGGGTAAAGCCAATGGCTGTAGCAGGAGCCAATCAATATA
CCTTTCATCTTGAGGCTACTGAGAACCCCGGGGCTTTGATTAAAGACATTCGGGAGAATGGAATGAAGGTTGGCCTTGCT
ATTAAACCAGGAACTACAGTTGAATATTTGGCACCATGGGCTAACCAAATAGATATGGCCTTGGTTATGACAGTGGAACC
TGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTTCACTGGTTGAGGACCCAGTTCCCGTCTTTGGACA
TAGAGGTTGATGGTGGAGTAGGTCCTGACACCATCCATAAATGTGCAGAGGCAGGAGCTAACATGATTGTGTCTGGCAGT
GCCATTATGAGGAGTGAAGACCCCAGATCCGTGATCAACCTGTTAAGAAATGTTTGCTCAGAAGCTGCTCAGAAACGTTC
TCTTGATCGGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 1 .46 RPM
SRP014902_testis 2 .12 RPM
SRP018288_heart 0 .73 RPM
SRP018288_kidney 3 .05 RPM
SRP018288_liver 0 .32 RPM
SRP018288_lung 1 .02 RPM
SRP018856_adipose 4 .94 RPM
SRP035408_brain 0 .16 RPM
SRP035408_liver 0 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004965 ortholog_one2many 3 retrogenes
retro_amel_1327, retro_amel_1363, retro_amel_827,
Bos taurus ENSBTAG00000047806 ortholog_one2many 2 retrogenes
retro_btau_343, retro_btau_815,
Canis familiaris ENSCAFG00000013811 ortholog_one2many 3 retrogenes
retro_cfam_1441, retro_cfam_1596, retro_cfam_1623,
Choloepus hoffmanni ENSCHOG00000001110 ortholog_one2many 5 retrogenes
retro_chof_1534, retro_chof_2386, retro_chof_392, retro_chof_492, retro_chof_574,
Callithrix jacchus ENSCJAG00000010822 ortholog_one2many 2 retrogenes
retro_cjac_1199, retro_cjac_1560,
Dasypus novemcinctus ENSDNOG00000003193 ortholog_one2many 1 retrogene
retro_dnov_789,
Equus caballus ENSECAG00000000002 ortholog_one2many 3 retrogenes
retro_ecab_245, retro_ecab_446, retro_ecab_562,
Homo sapiens ENSG00000197713 ortholog_one2many 5 retrogenes
retro_hsap_133, retro_hsap_2553, retro_hsap_2620, retro_hsap_3330, retro_hsap_620,
Latimeria chalumnae ENSLACG00000002800 ortholog_one2many 1 retrogene
retro_lcha_21,
Loxodonta africana ENSLAFG00000014127 ortholog_one2many 2 retrogenes
retro_lafr_675, retro_lafr_729,
Microcebus murinus ENSMICG00000009953 ortholog_one2many 4 retrogenes
retro_mmur_1380, retro_mmur_268, retro_mmur_393, retro_mmur_713,
Macaca mulatta ENSMMUG00000010513 ortholog_many2many 2 retrogenes
retro_mmul_366, retro_mmul_618,
Monodelphis domestica ENSMODG00000015827 ortholog_one2many 6 retrogenes
retro_mdom_1181, retro_mdom_1676, retro_mdom_449, retro_mdom_490, retro_mdom_505, retro_mdom_667,
Mustela putorius furo ENSMPUG00000007948 ortholog_one2many 2 retrogenes
retro_mputfur_1066, retro_mputfur_1280,
Nomascus leucogenys ENSNLEG00000007172 ortholog_one2many 3 retrogenes
retro_nleu_2263, retro_nleu_448, retro_nleu_638,
Oryctolagus cuniculus ENSOCUG00000016995 ortholog_one2many 1 retrogene
retro_ocun_768,
Otolemur garnettii ENSOGAG00000002778 ortholog_one2many 1 retrogene
retro_ogar_2673,
Pongo abelii ENSPPYG00000013132 ortholog_many2many 4 retrogenes
retro_pabe_1052, retro_pabe_1878, retro_pabe_2340, retro_pabe_555,
Pteropus vampyrus ENSPVAG00000014452 ortholog_one2many 2 retrogenes
retro_pvam_217, retro_pvam_636,
Ictidomys tridecemlineatus ENSSTOG00000010322 ortholog_many2many 1 retrogene
retro_itri_1750,
Tarsius syrichta ENSTSYG00000003304 ortholog_one2many 5 retrogenes
retro_tsyr_113, retro_tsyr_1153, retro_tsyr_1663, retro_tsyr_2129, retro_tsyr_546,
Tursiops truncatus ENSTTRG00000000908 ortholog_one2many 1 retrogene
retro_ttru_158,
Vicugna pacos ENSVPAG00000011585 ortholog_one2many 1 retrogene
retro_vpac_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_825 80.37 84.21
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Download FASTA sequences of all ENSSSCG00000016152 retrocopies