Parental gene:

RPE, ENSG00000197713

Aliases:None
Description:ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293]
Organism:Human (Homo sapiens)
Coordinates:2:210867288..210886300(+)


>ENSG00000197713
ATGGCGTCGGGCTGCAAGATTGGCCCGTCCATCCTCAACAGCGACCTGGCCAATTTAGGGGCCGAGTGCCTCCGGATGCT
AGACTCTGGGGCCGATTATCTGCACCTGGACGTAATGGACGGGCATTTTGTTCCCAACATCACCTTTGGTCACCCTGTGG
TAGAAAGCCTTCGAAAGCAGCTAGGCCAGGACCCTTTCTTTGACATGCACATGATGGTGTCCAAGCCAGAACAGTGGGTA
AAGCCAATGGCTGTAGCAGGAGCCAATCAGTACACCTTTCATCTCGAGGCTACTGAGAACCCAGGGGCTTTGATTAAAGA
CATTCGGGAGAATGGGATGAAGGTTGGCCTTGCCATCAAACCAGGAACCTCAGTTGAGTATTTGGCACCATGGGCTAATC
AGATAGATATGGCCTTGGTTATGACAGTGGAACCGGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTT
CACTGGTTGAGGACCCAGTTCCCATCTTTGGATATAGAGGTCGATGGTGGAGTAGGTCCTGACACTGTCCATAAATGTGC
AGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCCAGATCTGTGATCAATCTATTAA
GAAATGTTTGCTCAGAAGCTGCTCAGAAACGTTCTCTTGATCGGTGA

Library Parental gene expression (RPM)
bodymap2_liver 19 .75 RPM
bodymap2_lung 25 .74 RPM
bodymap2_breast 33 .64 RPM
bodymap2_adipose 27 .35 RPM
bodymap2_adrenal 17 .09 RPM
bodymap2_skeletal_muscle 7 .77 RPM
bodymap2_thyroid 32 .43 RPM
bodymap2_prostate 52 .48 RPM
bodymap2_colon 41 .49 RPM
bodymap2_testis 41 .06 RPM
bodymap2_brain 30 .19 RPM
bodymap2_heart 12 .07 RPM
bodymap2_white_blood_cells 28 .63 RPM
bodymap2_lymph_node 32 .18 RPM
bodymap2_ovary 39 .73 RPM
bodymap2_kidney 43 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004965 ortholog_one2one 3 retrogenes
retro_amel_1327, retro_amel_1363, retro_amel_827,
Bos taurus ENSBTAG00000047806 ortholog_one2one 2 retrogenes
retro_btau_343, retro_btau_815,
Canis familiaris ENSCAFG00000013811 ortholog_one2one 3 retrogenes
retro_cfam_1441, retro_cfam_1596, retro_cfam_1623,
Choloepus hoffmanni ENSCHOG00000001110 ortholog_one2one 5 retrogenes
retro_chof_1534, retro_chof_2386, retro_chof_392, retro_chof_492, retro_chof_574,
Callithrix jacchus ENSCJAG00000010822 ortholog_one2one 2 retrogenes
retro_cjac_1199, retro_cjac_1560,
Dasypus novemcinctus ENSDNOG00000003193 ortholog_one2one 1 retrogene
retro_dnov_789,
Equus caballus ENSECAG00000000002 ortholog_one2one 3 retrogenes
retro_ecab_245, retro_ecab_446, retro_ecab_562,
Latimeria chalumnae ENSLACG00000002800 ortholog_one2one 1 retrogene
retro_lcha_21,
Microcebus murinus ENSMICG00000009953 ortholog_one2one 4 retrogenes
retro_mmur_1380, retro_mmur_268, retro_mmur_393, retro_mmur_713,
Macaca mulatta ENSMMUG00000010513 ortholog_one2one 2 retrogenes
retro_mmul_366, retro_mmul_618,
Monodelphis domestica ENSMODG00000015827 ortholog_one2one 6 retrogenes
retro_mdom_1181, retro_mdom_1676, retro_mdom_449, retro_mdom_490, retro_mdom_505, retro_mdom_667,
Mustela putorius furo ENSMPUG00000007948 ortholog_one2one 2 retrogenes
retro_mputfur_1066, retro_mputfur_1280,
Nomascus leucogenys ENSNLEG00000007172 ortholog_one2one 3 retrogenes
retro_nleu_2263, retro_nleu_448, retro_nleu_638,
Otolemur garnettii ENSOGAG00000002778 ortholog_one2one 1 retrogene
retro_ogar_2673,
Pongo abelii ENSPPYG00000013132 ortholog_one2one 4 retrogenes
retro_pabe_1052, retro_pabe_1878, retro_pabe_2340, retro_pabe_555,
Pteropus vampyrus ENSPVAG00000014452 ortholog_one2one 2 retrogenes
retro_pvam_217, retro_pvam_636,
Sus scrofa ENSSSCG00000016152 ortholog_one2many 1 retrogene
retro_sscr_825,
Ictidomys tridecemlineatus ENSSTOG00000010322 possible_ortholog 1 retrogene
retro_itri_1750,
Tarsius syrichta ENSTSYG00000003304 ortholog_one2one 5 retrogenes
retro_tsyr_113, retro_tsyr_1153, retro_tsyr_1663, retro_tsyr_2129, retro_tsyr_546,
Tursiops truncatus ENSTTRG00000000908 ortholog_one2one 1 retrogene
retro_ttru_158,
Vicugna pacos ENSVPAG00000011585 ortholog_one2one 1 retrogene
retro_vpac_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_133 78.68 85.96
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2. retro_hsap_620 96.05 100.00
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3. retro_hsap_2553 82.82 71.05
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4. retro_hsap_2620 78.15 64.47
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5. retro_hsap_3330 56.93 60.44
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Download FASTA sequences of all ENSG00000197713 retrocopies