RetrogeneDB ID: | retro_mmul_618 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:73441745..73442225(+) | ||
Located in intron of: | ENSMMUG00000010311 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSMMUG00000010513 | ||
Aliases: | None | ||
Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001248643] |
Percent Identity: | 82.5 % |
Parental protein coverage: | 70.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDM |
.M.MMVSKPEQWVKP....GANQY.F.LEATENPG.LIKD..ENGMKVGLAIKPGTS..YLAPW.NQ.DM | |
Retrocopy | NMYMMVSKPEQWVKPVTIRGANQYIFQLEATENPGTLIKDNWENGMKVGLAIKPGTSIQYLAPWSNQLDM |
Parental | ALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPR |
ALVMTVEPGFGG.KFMEDMMPKVHWLR.QFPS..IEV.GG..PD.VH.CAEAGANMIVSGSAI.R..DPR | |
Retrocopy | ALVMTVEPGFGGHKFMEDMMPKVHWLRIQFPS*VIEVAGGIDPDAVHRCAEAGANMIVSGSAIVRRQDPR |
Parental | SVINLLRNVCSEAAQKRSLD |
SVINLLRNVCSEAAQK.SLD | |
Retrocopy | SVINLLRNVCSEAAQKHSLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 19 .38 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 14 .36 RPM |
SRP007412_cerebellum | 1 .16 RPM | 19 .31 RPM |
SRP007412_heart | 0 .35 RPM | 7 .83 RPM |
SRP007412_kidney | 0 .47 RPM | 21 .60 RPM |
SRP007412_liver | 0 .44 RPM | 5 .86 RPM |
SRP007412_testis | 0 .08 RPM | 12 .59 RPM |