RetrogeneDB ID: | retro_pabe_1878 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 22:24536024..24536504(+) | ||
Located in intron of: | ENSPPYG00000011694 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSPPYG00000013132 | ||
Aliases: | None | ||
Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001126655] |
Percent Identity: | 84.38 % |
Parental protein coverage: | 70.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDM |
..H.MVSKPEQWVK.MA..GA.QY.FHLEATENPGALIKDI.ENGMKVGLAIKPGT.V.YLAPWANQ.DM | |
Retrocopy | NVHVMVSKPEQWVKRMAIRGASQYIFHLEATENPGALIKDIWENGMKVGLAIKPGT*VQYLAPWANQLDM |
Parental | ALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPR |
ALVMTVEPGFGG.KFMEDMM.K.HWLR.QFPSL.IEV.GG..PDTVH.CAEAGANMIVSGSA..RSEDPR | |
Retrocopy | ALVMTVEPGFGGHKFMEDMMLKIHWLRIQFPSLAIEVAGGIDPDTVHRCAEAGANMIVSGSAVVRSEDPR |
Parental | SVINLLRNVCSEAAQKRSLD |
SVI.LLRNVCSEAAQK.SLD | |
Retrocopy | SVISLLRNVCSEAAQKDSLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 7 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 2 .05 RPM |
SRP007412_kidney | 0 .07 RPM | 11 .30 RPM |
SRP007412_liver | 0 .00 RPM | 5 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2553 |