RetrogeneDB ID: | retro_ecab_245 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:65356208..65356622(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSECAG00000000002 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 71.62 % |
Parental protein coverage: | 77.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | HFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYT-FHLEATENPGALIKDI-R |
HFV...TFGHPVVES...QLG....FDMH...SR.EQWVKP.AVAG..QY..F.LE.TE.PGAL.KDI.. | |
Retrocopy | HFVSSVTFGHPVVESV--QLG----FDMHVIASRLEQWVKPKAVAGTHQYS<FNLEVTEKPGALTKDI<S |
Parental | ENGMK-VGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGV |
EN.MK...LAIKPGTT.E.LAPWANQI..ALVMTV.PGFG.QKFM.D.MPKVHWLR.QFPSLD.EVD..V | |
Retrocopy | ENEMK<IDLAIKPGTTGEHLAPWANQIKIALVMTVGPGFGRQKFMNDVMPKVHWLRIQFPSLDLEVDCEV |
Parental | GPDTIHKC |
GPDT.HKC | |
Retrocopy | GPDTAHKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 5 .90 RPM |
SRP021940_cerebellum | 0 .00 RPM | 24 .41 RPM |
SRP021940_embryo | 0 .00 RPM | 20 .56 RPM |
SRP021940_placental_villous | 0 .05 RPM | 11 .35 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 14 .08 RPM |
SRP021940_testis | 0 .06 RPM | 17 .01 RPM |