RetrogeneDB ID: | retro_hsap_3330 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:64547205..64547608(-) | ||
Located in intron of: | ENSG00000049192 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250732 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSG00000197713 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 56.93 % |
Parental protein coverage: | 60.44 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMD-GHFVPNITFGHPVVESLRKQLGQDPFFDMHM |
S.CKI....LNS....L.AE....LDS.AD.LH.DV.D.G...P...F.....ESL.KQL..DPFFD.H. | |
Retrocopy | SSCKIVLPTLNSNIISLDAEGIQLLDSEAD*LHQDVLD>GSWFPASLFF--TLESLQKQLHKDPFFDIHI |
Parental | MVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMA |
MVS..E..VK..A..G.N.YTFHLEATE.PGA.IKDI.EN..K.G..IKPGT..E.LA..AN.IDMA | |
Retrocopy | MVSRLE*QVKTIAAVGTN*YTFHLEATEKPGAFIKDI*ENWIKFGPSIKPGTTIEFLAS*ANLIDMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 27 .35 RPM |
bodymap2_adrenal | 0 .08 RPM | 17 .09 RPM |
bodymap2_brain | 0 .00 RPM | 30 .19 RPM |
bodymap2_breast | 0 .02 RPM | 33 .64 RPM |
bodymap2_colon | 0 .00 RPM | 41 .49 RPM |
bodymap2_heart | 0 .00 RPM | 12 .07 RPM |
bodymap2_kidney | 0 .00 RPM | 43 .84 RPM |
bodymap2_liver | 0 .00 RPM | 19 .75 RPM |
bodymap2_lung | 0 .00 RPM | 25 .74 RPM |
bodymap2_lymph_node | 0 .00 RPM | 32 .18 RPM |
bodymap2_ovary | 0 .00 RPM | 39 .73 RPM |
bodymap2_prostate | 0 .00 RPM | 52 .48 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .77 RPM |
bodymap2_testis | 0 .00 RPM | 41 .06 RPM |
bodymap2_thyroid | 0 .00 RPM | 32 .43 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 28 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_562 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |