RetrogeneDB ID: | retro_acar_56 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:58058230..58058464(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSACAG00000009671 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.74 % |
Parental protein coverage: | 55.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSTLRNIQGLHAPLKLQMEFKAVKQAQRLPFLHSSNLSLDILKGNYDCIGFEDILNDPEQNEIMGEPHLM |
L..LRNI.GLHAPLKLQMEFKAVKQAQ.LPFLHS..LSLDILKGNYD.IGFEDILNDPEQNEIMGE.HLM | |
Retrocopy | LLVLRNIKGLHAPLKLQMEFKAVKQAQHLPFLHSFHLSLDILKGNYDGIGFEDILNDPEQNEIMGESHLM |
Parental | AERKLGLL |
AERKLGLL | |
Retrocopy | AERKLGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 149 .93 RPM |
SRP009831_brain | 0 .00 RPM | 71 .34 RPM |
SRP009831_dewlap | 0 .00 RPM | 78 .85 RPM |
SRP009831_embryo | 0 .00 RPM | 143 .89 RPM |
SRP009831_heart | 0 .00 RPM | 61 .58 RPM |
SRP009831_liver | 0 .00 RPM | 170 .56 RPM |
SRP009831_lung | 0 .00 RPM | 73 .85 RPM |
SRP009831_ovary | 0 .00 RPM | 82 .00 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 88 .14 RPM |