RetrogeneDB ID: | retro_cpor_630 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:18278873..18279282(-) | ||
Located in intron of: | ENSCPOG00000003170 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSCPOG00000001710 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NARGLGSQ-LKDSIPVTELSASGPFEHHDLLRKGF-SSVKNELLPSHALELSEKNFQLNQDKMNFSTLRN |
NARG.GSQ..KDS..V.EL.ASG.FEHH.LL.KGF.S.VK.ELLPSHAL.LSEKNF.LNQDKMN..TLRN | |
Retrocopy | NARGHGSQ<VKDSVLVAELLASGLFEHHHLL*KGF<SLVKKELLPSHALKLSEKNF*LNQDKMN--TLRN |
Parental | IQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLALDILRGNEETIGFEDILNDPSQSELMGEPHLMVEYKLG |
IQGLFAPLKLQM.FK...QVQ.LPFLSSSNL.LDILR...ETIGFEDILNDPSQS.LMGEPHLM.EYKLG | |
Retrocopy | IQGLFAPLKLQMKFKVIYQVQCLPFLSSSNLSLDILRDDGETIGFEDILNDPSQSDLMGEPHLM-EYKLG |
Parental | LL |
LL | |
Retrocopy | LL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 52 .13 RPM |
SRP017611_liver | 0 .00 RPM | 52 .89 RPM |
SRP040447_lung | 0 .03 RPM | 27 .97 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 44 .60 RPM |