RetrogeneDB ID: | retro_rnor_2325 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:127332631..127333039(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000021721 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pomp | ||
Ensembl ID: | ENSRNOG00000049229 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:RefSeq peptide;Acc:NP_001094412] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MNARGLGSQLKDSIPVTELSASGPFESHDLL-RKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRN |
MN.RG....LKDSIPVT.LSASGPF.SHDLL.RKGF...K....P...L....K.FQLNQDKMNF.T.RN | |
Retrocopy | MNTRG----LKDSIPVTKLSASGPFQSHDLL>RKGFLV*KMNFCPLTFLNY-QKTFQLNQDKMNFFTVRN |
Parental | IQGLFAPLKLQMEFKAVQQVQRLPFLPSSNLSLDILRGNDETI-GFEDILNDPSQSELMGEPHMMVEYKL |
..GLFAPL.LQMEFKAVQQ.QRL.FLPSSNLSLDIL..NDET..GFEDIL.DPSQS.LMG.PH.MVEYKL | |
Retrocopy | NKGLFAPLRLQMEFKAVQQIQRLLFLPSSNLSLDILSSNDETM<GFEDILTDPSQSALMGKPHLMVEYKL |
Parental | GLL |
G.L | |
Retrocopy | GML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .07 RPM |
SRP017611_liver | 0 .00 RPM | 0 .07 RPM |