RetrogeneDB ID: | retro_tbel_4172 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_69936:5730..6141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSTBEG00000012149 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 94.16 % |
Parental protein coverage: | 88.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NARGLGSQLKDSIPITELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRTSQ |
NARGLGSQLKDSIP.TELSASGPFESHDLL.KGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLR..Q | |
Retrocopy | NARGLGSQLKDSIPVTELSASGPFESHDLLWKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQ |
Parental | GLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDILRGNDETIGFEDILNDPSQSELMGEPHVMVEYKL |
GLFAPLKLQMEFK.VQQV.RLPFLSSSNLSLDILRGND.TIGFE.ILNDPSQSELMGEPHVMVEYKL | |
Retrocopy | GLFAPLKLQMEFKVVQQV*RLPFLSSSNLSLDILRGNDKTIGFEGILNDPSQSELMGEPHVMVEYKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |