RetrogeneDB ID: | retro_amel_965 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192773.1:1171673..1172014(+) | ||
Located in intron of: | ENSAMEG00000010612 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSAMEG00000008961 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 79.31 % |
Parental protein coverage: | 82.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SHDLLRKGLPCVKNELLPSHPLELSEKN-FQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFL |
..DLL.KG.PCVKNEL.P.H.LELSEKN.FQLNQDKMNFSTLRNI.GLFAPLKLQ..FKAVQQ.Q.LPFL | |
Retrocopy | NRDLL*KGFPCVKNELSPKHLLELSEKN<FQLNQDKMNFSTLRNIHGLFAPLKLQTTFKAVQQIQHLPFL |
Parental | PSSNLSLDILRGNDETIGFEDILNDPSQSELMGEPHLMVEYKLGLL |
P.SNLSL.IL.GND.T.GFEDIL.D.SQS.LMGE..LMVE.KLGLL | |
Retrocopy | PRSNLSLGILKGNDGTAGFEDIL-DLSQSKLMGELYLMVEHKLGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |