RetrogeneDB ID: | retro_fcat_2020 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:111638598..111639019(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSFCAG00000008235 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 83.69 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MNARGLGSQLKDSIPVTELSASGP-FESHDLLRKGLPCVKNELLPSHPLELLFKGFQLNQDKMNFSTLRN |
MN..GLGSQLKDSIPVTEL.ASGP..ESHDLL.KGLPCVKNELLPSHPLE...K.FQLNQDKMN.S.LRN | |
Retrocopy | MNVKGLGSQLKDSIPVTEL*ASGP>YESHDLL*KGLPCVKNELLPSHPLEISEKNFQLNQDKMNSSILRN |
Parental | IQGLFAPLKLQMEFKAVQQAQRLPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELMGEPHLMVEYKLG |
IQGLF.PLKLQMEFKAVQ..QRLPF.PSSNLSLD.LRGND.TI.FE.ILN.PSQSE.MGEP.LMVEYKLG | |
Retrocopy | IQGLFVPLKLQMEFKAVQRVQRLPFPPSSNLSLDTLRGNDQTIAFEHILNEPSQSERMGEPQLMVEYKLG |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .60 RPM |
SRP017611_liver | 0 .00 RPM | 24 .97 RPM |