RetrogeneDB ID: | retro_ggor_1684 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:58524074..58524329(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSGGOG00000015316 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.59 % |
Parental protein coverage: | 60.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQ |
..QL.Q.KM.FSTLRNIQGLFAP.K.Q.EF.A...VQ.LPF.SSSNLSLDV.RG..ET..F.DIL.DPSQ | |
Retrocopy | HIQLKQNKMPFSTLRNIQGLFAPVK*QIEFRAGP*VQHLPFHSSSNLSLDVWRGHAETSRFKDILIDPSQ |
Parental | SEVMGEPHLMVEYKL |
SEV..EP.LM.EYKL | |
Retrocopy | SEVIREPLLMMEYKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 26 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .48 RPM |
SRP007412_heart | 0 .00 RPM | 12 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .58 RPM |
SRP007412_liver | 0 .00 RPM | 29 .20 RPM |
SRP007412_testis | 0 .10 RPM | 66 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2261 |
Pan troglodytes | retro_ptro_1601 |
Macaca mulatta | retro_mmul_1027 |
Equus caballus | retro_ecab_329 |