RetrogeneDB ID: | retro_cpor_1465 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:978837..979217(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSCPOG00000001710 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.08 % |
Parental protein coverage: | 90.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SIPVTELSASGPFEHHDLLRKGFSSVKNELLPSHALELSEKN-FQLNQDKMNFSTLRNIQGLFAPLKLQM |
SIPV.ELSASGP.E.HDLLRKGF..VKNELLPSHALELS....F.LNQDK.N.STLRNIQGLFAPLK..M | |
Retrocopy | SIPVPELSASGPLECHDLLRKGFPCVKNELLPSHALELSXXX>F*LNQDKVNLSTLRNIQGLFAPLKSHM |
Parental | EFKAVQQVQRLPFLSSSNLALDILRGNEETIGFEDI-LNDPSQSEL-MGEPHLMVEYKLG |
EFKAVQQ....P.LSSSN....IL.G...TIGFEDI.LNDPSQSEL..GEP.L.V..K.G | |
Retrocopy | EFKAVQQARCPPCLSSSNFSQGILGGDDQTIGFEDI<LNDPSQSEL<QGEPYLLVA*KPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 52 .13 RPM |
SRP017611_liver | 0 .00 RPM | 52 .89 RPM |
SRP040447_lung | 0 .00 RPM | 27 .97 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 44 .60 RPM |