RetrogeneDB ID:

retro_nleu_1440

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397293.1:6903846..6904146(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:POMP
Ensembl ID:ENSNLEG00000000572
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1440
GTTTTAAAATTTCATCCTCTTGAATTATCAGAAAAAAATTTCCAGCTCAACCAAGATAAAATGAATTTTTCCACACTGAG
AAACATTCAGGGTCTATTTGCTCCACTAAAATTACAGATGGAATTCAAGGCAGTGCAGCAGGTTCAGCGTCTTCCATTTC
TTTCAAGCTCAAATCTTTCACTGGATGTTTTGAGGGGTAACGATGAGACTATTGGATTTGAGGATATTCTTAATGATCCA
TCACAAAGCGAAGTCATGGGAGAGCCACACTTGATGGTGGAATATAAACTCCGTTTACTG

ORF - retro_nleu_1440 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96. %
Parental protein coverage: 70.92 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDET
.L..HPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDET
RetrocopyVLKFHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDET
ParentalIGFEDILNDPSQSEVMGEPHLMVEYKLGLL
IGFEDILNDPSQSEVMGEPHLMVEYKL.LL
RetrocopyIGFEDILNDPSQSEVMGEPHLMVEYKLRLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1440 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 34 parental genes, and 100 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000096711 retrocopy
Ailuropoda melanoleuca ENSAMEG000000089611 retrocopy
Bos taurus ENSBTAG000000140243 retrocopies
Choloepus hoffmanni ENSCHOG0000001280712 retrocopies
Callithrix jacchus ENSCJAG000000194733 retrocopies
Cavia porcellus ENSCPOG000000017103 retrocopies
Dasypus novemcinctus ENSDNOG000000088484 retrocopies
Equus caballus ENSECAG000000119511 retrocopy
Echinops telfairi ENSETEG000000124482 retrocopies
Felis catus ENSFCAG000000082355 retrocopies
Homo sapiens ENSG000001329632 retrocopies
Gorilla gorilla ENSGGOG000000153162 retrocopies
Loxodonta africana ENSLAFG000000036651 retrocopy
Macropus eugenii ENSMEUG000000154162 retrocopies
Myotis lucifugus ENSMLUG000000103221 retrocopy
Macaca mulatta ENSMMUG000000000972 retrocopies
Mustela putorius furoENSMPUG000000046903 retrocopies
Mus musculus ENSMUSG000000296493 retrocopies
Nomascus leucogenys ENSNLEG00000000572 3 retrocopies
retro_nleu_1285, retro_nleu_1440 , retro_nleu_1998,
Oryctolagus cuniculus ENSOCUG000000101371 retrocopy
Otolemur garnettii ENSOGAG000000060441 retrocopy
Ochotona princeps ENSOPRG000000165172 retrocopies
Procavia capensis ENSPCAG000000096801 retrocopy
Pongo abelii ENSPPYG000000052471 retrocopy
Pan troglodytes ENSPTRG000000057451 retrocopy
Pteropus vampyrus ENSPVAG000000000323 retrocopies
Rattus norvegicus ENSRNOG000000484702 retrocopies
Rattus norvegicus ENSRNOG000000492294 retrocopies
Sorex araneus ENSSARG000000011345 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000136872 retrocopies
Tupaia belangeri ENSTBEG0000001214913 retrocopies
Tarsius syrichta ENSTSYG000000051214 retrocopies
Tursiops truncatus ENSTTRG000000129244 retrocopies
Vicugna pacos ENSVPAG000000013152 retrocopies



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