RetrogeneDB ID: | retro_tsyr_1887 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_640656:2..378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSTSYG00000005121 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 70.77 % |
Parental protein coverage: | 90.07 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | PVTELSASGPFESHDLLRKGFS-CVKNELLPSHPLE-LSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME |
PVTELSASGPFE...LL.K.FS.C.KNE.LPSHPL..LSEKNF..N.D.M.FSTLRNIQGLFAPLKL.M. | |
Retrocopy | PVTELSASGPFENRGLLQKDFS>CAKNEMLPSHPLD<LSEKNF*PNKDNMKFSTLRNIQGLFAPLKL*MD |
Parental | FKAVQQVQRLPFLSSSNLSLDILKG-NDETIGFEDILNDPSQSEVMGEPHMMVEYKLGLL |
FK.V..VQ.L.FLSSS.LS....KG.N.ETI..E.I..D.SQ.EVMG.PH.MVEYKLGLL | |
Retrocopy | FKTV*HVQHLSFLSSSHLS--YFKG>NYETIESENIFHDLSQGEVMG*PHLMVEYKLGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |