RetrogeneDB ID: | retro_sara_423 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_200613:407..785(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSSARG00000001134 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 87.3 % |
Parental protein coverage: | 78.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SIPVTELSASGPFENHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME |
S.PVTELSASGP.ENHDLL.KGFSCVKNELLPSHPLELS...FQLNQDKMNFSTLRN.QG.FAPLKLQME | |
Retrocopy | STPVTELSASGPLENHDLLQKGFSCVKNELLPSHPLELSXXXFQLNQDKMNFSTLRNTQGPFAPLKLQME |
Parental | FKAVQQVQRLPFLPSSNLSLDILRGSDETIGFEDILNDPSQSELMGEPHLMVEHKL |
.KAVQQVQ.LPFLP.S.LSLDILRG.DET.GF.DILNDPSQSELMG.PHLMVEHKL | |
Retrocopy | YKAVQQVQCLPFLPGSHLSLDILRGTDETVGFGDILNDPSQSELMGKPHLMVEHKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |