RetrogeneDB ID: | retro_tbel_1015 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3593:15197..15601(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSTBEG00000012149 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 66.91 % |
Parental protein coverage: | 87.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ARGLGSQLKDSIPITE-LSASGPFESHDLLRKGFSCVKNELLPSHPLEL-SEKNFQLNQDKMNFSTLRTS |
AR.LGSQLKDSIP.TE..SASGPFESHDL.RK....VKNELL.SHPLEL.SE..FQLNQDKMNFSTL... | |
Retrocopy | ARELGSQLKDSIPATE<RSASGPFESHDL-RKXXXXVKNELLASHPLEL>SE*KFQLNQDKMNFSTLKNI |
Parental | QGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDILR-GNDETIGFEDILNDPSQSELMGEPHVMVEYKL |
QGL.A.LKLQMEF.AV.Q...LPF.........IL..G..ETIGFED.LND.S..EL.GE.H..V..KL | |
Retrocopy | QGLCALLKLQMEFTAV*QTLCLPFFVKFKPFTGILK<GTNETIGFEDTLNDLSPRELTGESHSIVDHKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |