RetrogeneDB ID: | retro_tbel_193 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1424:131458..131826(-) | ||
Located in intron of: | ENSTBEG00000007503 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSTBEG00000012149 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 80.65 % |
Parental protein coverage: | 78.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NARGLGSQLKDSIPITELSASGPFESHDLLRKGF-SCVKNEL-LPSHPLELSEKNFQLNQDKMNFSTLRT |
N.RGLGS.LK..IP.TE..ASGPF.SHDLLRK.F.SCVKNEL.LPSH.LELSEKNFQ.NQDKM.FSTLR. | |
Retrocopy | NTRGLGSPLKANIPVTEFAASGPFKSHDLLRKSF>SCVKNEL>LPSHLLELSEKNFQPNQDKMHFSTLRN |
Parental | SQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDILRGNDETIGFEDILNDPSQ |
...LFAPL.LQMEFKAVQQ.QRLPF.SSSNLSL.I.RGNDETIG.EDILNDPSQ | |
Retrocopy | IRDLFAPLTLQMEFKAVQQAQRLPFWSSSNLSLAIWRGNDETIGCEDILNDPSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |