RetrogeneDB ID: | retro_fcat_742 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:147658346..147658770(+) | ||
Located in intron of: | ENSFCAG00000031331 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024405 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSFCAG00000008235 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 85.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNARGLGSQLKDSIPVTELSASGPFESHDLLRKGLPCVKNELLPSHPLELLFKG-FQLNQDKMNFSTLRN |
MNARGLGSQLKDSIPV.ELSASGPFESH.LL.KGLPCVKNELLPSHPLEL.....FQLNQDKMNFSTLR. | |
Retrocopy | MNARGLGSQLKDSIPVAELSASGPFESHALLQKGLPCVKNELLPSHPLELSXXX>FQLNQDKMNFSTLRK |
Parental | IQGLFAPLKLQMEFKAVQQAQRLPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELMGEPHLMVEYKLG |
IQGLFAPLKLQ..FKAV.Q.QRLPF.PSSNLS..ILRG.DET.GFEDI.NDPSQSELMGEP.LMVEYKLG | |
Retrocopy | IQGLFAPLKLQVGFKAVHQVQRLPFPPSSNLSRGILRGHDETLGFEDIPNDPSQSELMGEPRLMVEYKLG |
Parental | LL |
LL | |
Retrocopy | LL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .52 RPM | 28 .92 RPM |
SRP017611_kidney | 4 .64 RPM | 33 .60 RPM |
SRP017611_liver | 2 .43 RPM | 24 .97 RPM |