RetrogeneDB ID: | retro_rnor_1843 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:157663394..157663748(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pomp | ||
Ensembl ID: | ENSRNOG00000049229 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:RefSeq peptide;Acc:NP_001094412] |
Percent Identity: | 81.67 % |
Parental protein coverage: | 82.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | FESHDLL-RKGF-SCVKNELLPSHPLELSEKNF-QLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQR |
...HDLL.RKGF.SC.KNELLPSHPLELS.....QLNQDKM.FSTLRNIQG.FAPLKLQMEFKAV.Q.Q. | |
Retrocopy | YGAHDLL>RKGF>SCGKNELLPSHPLELSXXXX>QLNQDKMDFSTLRNIQGVFAPLKLQMEFKAVRQLQH |
Parental | LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELMGEPHMMVEYKLGLL |
L.FLPSSNLSLDILRGNDETIGFEDIL.DPSQSELMG.PH.MV..KLGLL | |
Retrocopy | LLFLPSSNLSLDILRGNDETIGFEDILHDPSQSELMGKPHLMVGSKLGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .07 RPM |
SRP017611_liver | 0 .00 RPM | 0 .07 RPM |