RetrogeneDB ID: | retro_mmus_3300 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:99096481..99096766(+) | ||
Located in intron of: | ENSMUSG00000032462 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pomp | ||
Ensembl ID: | ENSMUSG00000029649 | ||
Aliases: | Pomp, 2510048O06Rik, Ump1 | ||
Description: | proteasome maturation protein [Source:MGI Symbol;Acc:MGI:1913787] |
Percent Identity: | 56.7 % |
Parental protein coverage: | 67.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SHPLELS-EKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVHRLPFLPSSNLSLDIL-RGNDETI |
SH.L.LS.EK.FQL.QDKM..S...NIQGLFAPLKLQMEFKA..QV..LP.L.SSN.S.D...R.N.... | |
Retrocopy | SHSLTLS>EKHFQLSQDKMTPSIQINIQGLFAPLKLQMEFKAL*QVWYLPCLSSSNISQDPI<RDNGVAT |
Parental | GFEDILNDPSQSELMGEPHVMVEHKLG |
GFE.ILN.PSQS..............G | |
Retrocopy | GFEAILNGPSQSKPARQTPISIKQCAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .86 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .58 RPM |
SRP007412_heart | 0 .00 RPM | 59 .89 RPM |
SRP007412_kidney | 0 .02 RPM | 54 .44 RPM |
SRP007412_liver | 0 .00 RPM | 94 .84 RPM |
SRP007412_testis | 0 .00 RPM | 23 .33 RPM |