RetrogeneDB ID: | retro_tbel_3861 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_24346:1489..1832(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSTBEG00000012149 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 72.65 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NARGLGSQLKDSIPITELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRTS- |
N.RGLG.QLKD.IP...L.AS.PFESHDLL.KGFSCV.NELLP.HPL..S...FQ..QDK.NFSTL..S. | |
Retrocopy | NVRGLGFQLKDNIPVNKLFASEPFESHDLLWKGFSCVNNELLPNHPLKISKIYFQRYQDKINFSTLKIS< |
Parental | QGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDILRGN-DETIGFED |
QGLFAPLKL..EF..VQQ.Q.LP.LSSSN.SLDILRGN..ETIGFED | |
Retrocopy | QGLFAPLKL*IEFI*VQQAQHLPVLSSSNFSLDILRGN<RETIGFED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |