RetrogeneDB ID: | retro_btau_1115 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 26:22697940..22698266(-) | ||
Located in intron of: | ENSBTAG00000007435 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSBTAG00000015473 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62992] |
Percent Identity: | 61.54 % |
Parental protein coverage: | 71.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENV-KAKIQDK-EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH |
MQIF.K.L...TITLEV.PS.T.EN...AKIQDK...I.PD..RLI.AGKQLE.G.T..DY.IQKEST.H | |
Retrocopy | MQIFMKILRRMTITLEVKPSATTENE<RAKIQDK<KIILPD**RLISAGKQLEHGCTF-DYKIQKESTFH |
Parental | -LVLRLRGGAKK-RKKKSYTTPKKNKH-KRKKVKL-AVLKYYKVDEN |
.L...L..GAKK.RK..SY..P.KNK..KR.K.KL...LKY.KVD.N | |
Retrocopy | >LLVGLHDGAKK<RK-NSYVSP-KNKR>KRMKTKLGGCLKYHKVDAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .43 RPM | 163 .66 RPM |
ERP005899_muscle | 0 .05 RPM | 850 .43 RPM |
SRP017611_brain | 0 .18 RPM | 94 .92 RPM |
SRP017611_kidney | 0 .12 RPM | 263 .88 RPM |
SRP017611_liver | 0 .30 RPM | 151 .02 RPM |
SRP030211_testis | 0 .09 RPM | 155 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004017 | 5 retrocopies | |
Bos taurus | ENSBTAG00000015473 | 6 retrocopies | |
Canis familiaris | ENSCAFG00000023471 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000010052 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000007678 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000023133 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017064 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000029449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015563 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000001819 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003613 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011928 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004426 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009566 | 5 retrocopies |