Parental gene: | RPS27A, ENSBTAG00000015473 |
| Aliases: | None |
| Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62992] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 11:37823445..37825428(+) |
>ENSBTAG00000015473
ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCCTCGGATACAATAGAAAATGTAAA
GGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAC
GTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGCGCTAAGAAAAGA
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTTAAATTGGCTGTTCTGAAATACTACAA
GGTGGATGAGAATGGCAAAATCAGTCGCCTTCGCCGGGAGTGTCCCTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCA
GTCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTATTGTTTCAACAAACCAGAAGACAAGTAA
ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCCTCGGATACAATAGAAAATGTAAA
GGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAC
GTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGCGCTAAGAAAAGA
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTTAAATTGGCTGTTCTGAAATACTACAA
GGTGGATGAGAATGGCAAAATCAGTCGCCTTCGCCGGGAGTGTCCCTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCA
GTCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTATTGTTTCAACAAACCAGAAGACAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 94 .92 RPM |
| SRP017611_kidney | 263 .88 RPM |
| SRP017611_liver | 151 .02 RPM |
| ERP005899_muscle | 850 .43 RPM |
| ERP005899_liver | 163 .66 RPM |
| SRP030211_testis | 155 .57 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004017 | possible_ortholog | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000023471 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010052 | possible_ortholog | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007678 | possible_ortholog | 9 retrogenes | |
| Loxodonta africana | ENSLAFG00000023133 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017064 | ortholog_one2one | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000029449 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015563 | possible_ortholog | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000001819 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003613 | possible_ortholog | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000025871 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011928 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004426 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000009566 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_395 | 72.50 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_440 | 78.90 | 69.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_664 | 85.44 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_1115 | 61.54 | 71.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_btau_1213 | 87.82 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_btau_1631 | 94.87 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000015473 retrocopies