RetrogeneDB ID: | retro_btau_664 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 17:41695716..41696179(+) | ||
Located in intron of: | ENSBTAG00000019229 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSBTAG00000015473 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62992] |
Percent Identity: | 85.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN-IQKESTLH |
.QIFV.TL.GKTITL..VEPSDTIENVK.K.QDKEGIPPDQ.RLIFAG.QL.DG.TLSDY..IQKESTLH | |
Retrocopy | VQIFVETLMGKTITL<QVEPSDTIENVKVKVQDKEGIPPDQKRLIFAGRQLKDGCTLSDYT<IQKESTLH |
Parental | LVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDR |
LVLRL.GGAKKRKK.S.T.PKKNKHKRKKVKLA.LKYYKVDENGKI.RLR.ECPSDECGAG.FMASHF.R | |
Retrocopy | LVLRLCGGAKKRKK-S*TAPKKNKHKRKKVKLAILKYYKVDENGKINRLRWECPSDECGAGIFMASHFGR |
Parental | HYCGKCCLTYCFNKPEDK |
HYCGKCCLTYCFNKPE.K | |
Retrocopy | HYCGKCCLTYCFNKPENK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 163 .66 RPM |
ERP005899_muscle | 0 .48 RPM | 850 .43 RPM |
SRP017611_brain | 0 .78 RPM | 94 .92 RPM |
SRP017611_kidney | 0 .12 RPM | 263 .88 RPM |
SRP017611_liver | 0 .00 RPM | 151 .02 RPM |
SRP030211_testis | 0 .32 RPM | 155 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004017 | 5 retrocopies | |
Bos taurus | ENSBTAG00000015473 | 6 retrocopies | |
Canis familiaris | ENSCAFG00000023471 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000010052 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000007678 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000023133 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017064 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000029449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015563 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000001819 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003613 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011928 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004426 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009566 | 5 retrocopies |