RetrogeneDB ID: | retro_mmus_45 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:52331613..52332327(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000024510 | |
Aliases: | Ftmt, 4930447C24Rik, FerH, Fth3, MtF | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSMUSG00000024661 | ||
Aliases: | Fth1, FHC, Fth, HFt, MFH | ||
Description: | ferritin heavy chain 1 [Source:MGI Symbol;Acc:MGI:95588] |
Percent Identity: | 82.56 % |
Parental protein coverage: | 94.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQN |
PS.VRQN.H.D.EAAINRQINLELYASYVYLSM..YF.RDDVAL.NF.KYFL.QS.EEREHAEKLMKLQN | |
Retrocopy | PSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALYNFSKYFLRQSLEEREHAEKLMKLQN |
Parental | QRGGRIFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLSEQVKS |
QRGGRI.LQDIKKPD.DDWE.GL.AMECAL.LEK.VNQSLL.LH.LA..K.DPHLCDF.ET.YL.EQVKS | |
Retrocopy | QRGGRICLQDIKKPDKDDWECGLRAMECALLLEKNVNQSLLDLHTLASEKGDPHLCDFLETHYLHEQVKS |
Parental | IKELGDHVTNLRKMGAPEAGMAEYLFDKHTLG |
IKELGDHV.NL..MGAP.AG.AEYLFDKHTLG | |
Retrocopy | IKELGDHVHNLVTMGAPAAGLAEYLFDKHTLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1220 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1340 .29 RPM |
SRP007412_heart | 0 .00 RPM | 1076 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 2397 .51 RPM |
SRP007412_liver | 0 .03 RPM | 1186 .06 RPM |
SRP007412_testis | 25 .98 RPM | 144 .99 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_59743 | 1060 libraries | 6 libraries | 1 library | 1 library | 4 libraries |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_87 |
Pongo abelii | retro_pabe_35 |
Bos taurus | retro_btau_121 |
Sus scrofa | retro_sscr_78 |