RetrogeneDB ID: | retro_mmus_1699 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:23945011..23945548(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 96.09 % |
Parental protein coverage: | 91.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANA |
GKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGR.MGI.KRK.TANA | |
Retrocopy | GKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRLMGIEKRKDTANA |
Parental | RMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLAD |
RMPEKVTWMRRMRILR.LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLAD | |
Retrocopy | RMPEKVTWMRRMRILRQLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLAD |
Parental | QAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
QAE.RRSKTKEARKR.EE.LQAKKEEIIKTLSKEEETKK | |
Retrocopy | QAETRRSKTKEARKRWEEHLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .04 RPM | 33 .22 RPM |
SRP007412_heart | 0 .00 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .06 RPM | 60 .93 RPM |
SRP007412_liver | 0 .05 RPM | 55 .27 RPM |
SRP007412_testis | 0 .00 RPM | 32 .47 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_58211 | 98 libraries | 220 libraries | 626 libraries | 112 libraries | 16 libraries |