RetrogeneDB ID: | retro_shar_159 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834500.1:191474..191979(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSSHAG00000016482 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 62.94 % |
Parental protein coverage: | 86.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMP |
KV.LDP.ETNEIA.ANS.QQ..KLIKD..II...VTV.S..RC.K.TLA..KGRHMG.GKRKGT..A.MP | |
Retrocopy | KV*LDPSETNEIAKANSHQQVWKLIKDAPIIQ*LVTVPSCFRCQKSTLAQWKGRHMGSGKRKGTVKAPMP |
Parental | EKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE |
..VTWMR...IL..LL.RY.ES.KI.....HSL..KVKG...KNK.I.MEHIHKLKADKA..KLLADQA. | |
Retrocopy | KRVTWMRGRGILHHLLQRYHESRKIVHLRCHSLSSKVKGSMSKNKQIFMEHIHKLKADKAQEKLLADQAD |
Parental | ARRSKTKEARKRREERLQA-KKEEIIKTLS |
....K.KEA....E..LQ..K.E.I.KTLS | |
Retrocopy | TCWFKIKEA*NCWEYHLQV>KRE-IFKTLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |