RetrogeneDB ID: | retro_mmus_2301 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:127691937..127692522(-) | ||
Located in intron of: | ENSMUSG00000028028 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000089988 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 94.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANAN..QQIRKLIKDGLIIRKPVTVHSRA.CRK.TLAR | |
Retrocopy | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANFHQQIRKLIKDGLIIRKPVTVHSRAHCRKKTLAR |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME |
RKGRHMGIGKR.GTANARMPEKVTWMRRMRILR.LLRRYRES.KIDR.MYHSLYLKVKGNV.KNKRILME | |
Retrocopy | RKGRHMGIGKREGTANARMPEKVTWMRRMRILRQLLRRYRES-KIDRRMYHSLYLKVKGNVLKNKRILME |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
HIHKLKADKA.KKLLADQAEARRSKTKEARKRREE.LQAKKEEIIKTLSKEEETKK | |
Retrocopy | HIHKLKADKAHKKLLADQAEARRSKTKEARKRREEHLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .26 RPM | 33 .22 RPM |
SRP007412_heart | 0 .53 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .56 RPM | 60 .93 RPM |
SRP007412_liver | 0 .19 RPM | 55 .27 RPM |
SRP007412_testis | 0 .18 RPM | 32 .47 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_92020 | 202 libraries | 387 libraries | 474 libraries | 8 libraries | 1 library |