RetrogeneDB ID: | retro_mmus_3310 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:120316327..120316914(+) | ||
Located in intron of: | ENSMUSG00000041794 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083772 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 84.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
MSMLR.QKRL.SS.L.CGKKKV.LDPNETNEI.N.NS.Q.I.KLIKDGLI..KPVTVHS.ARC.KN.LA. | |
Retrocopy | MSMLRPQKRLVSSALCCGKKKVLLDPNETNEIDNVNSCQ*IKKLIKDGLIPGKPVTVHSQARCWKNSLA* |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFK-NKRILM |
.KGRH.GIGKRKGTANARMPEKVTW.RR.RILR.LLRR..ESKK.DRHMYHSLYLKVKG.VFK..KRILM | |
Retrocopy | QKGRHKGIGKRKGTANARMPEKVTWVRRVRILRWLLRRFWESKKTDRHMYHSLYLKVKGKVFK<SKRILM |
Parental | EHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
EHIHKLKADKARKKLLADQAEARRSKTKEA.K.REERLQAKKEE.I.TLSKEEETKK | |
Retrocopy | EHIHKLKADKARKKLLADQAEARRSKTKEA*KPREERLQAKKEELI*TLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .22 RPM |
SRP007412_heart | 0 .00 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 60 .93 RPM |
SRP007412_liver | 0 .00 RPM | 55 .27 RPM |
SRP007412_testis | 0 .00 RPM | 32 .47 RPM |