RetrogeneDB ID: | retro_mmus_3187 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:35150085..35150440(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 80.17 % |
Parental protein coverage: | 60.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDG-LIIRKPVTVHSRARCRKNTLARR |
ML..QKRLASSVLRCGK.KVWLDP.E.NEIANANSRQQIRKL.KDG.LII..PVT.HSR..C.K.TLARR | |
Retrocopy | MLGPQKRLASSVLRCGKQKVWLDPDENNEIANANSRQQIRKLTKDG<LIIQEPVTLHSRSCCQKTTLARR |
Parental | -KGR-HMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY |
..G...MGIGKRKGTA.ARMPEKVTWMR.MRILRRLL.RY.ESKKI.RHMY | |
Retrocopy | <EGQAYMGIGKRKGTASARMPEKVTWMRKMRILRRLLTRYGESKKIGRHMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .22 RPM |
SRP007412_heart | 0 .03 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 60 .93 RPM |
SRP007412_liver | 0 .00 RPM | 55 .27 RPM |
SRP007412_testis | 0 .00 RPM | 32 .47 RPM |