RetrogeneDB ID: | retro_mmus_571 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:71318765..71319352(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 84.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDPNE-TNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLA |
MSMLRLQKRLASS.L.C.K.K.WLDP...TNEIANANSRQQIRKLIKDGLIIRKPV.VHS.AR..KNTLA | |
Retrocopy | MSMLRLQKRLASSTLHCRKRKIWLDPKK>TNEIANANSRQQIRKLIKDGLIIRKPVIVHSWAR*QKNTLA |
Parental | RRKGRHMGIGKRKGTANARM-PEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRIL |
R.K.R.MGIGKRKG.ANA.M..EKVTWMRR.RILR.LLRRY.ESKKIDRHMY.SLYLKVKGNVFKNKRI. | |
Retrocopy | RWKDRNMGIGKRKGIANAQM<AEKVTWMRRVRILRQLLRRYQESKKIDRHMYKSLYLKVKGNVFKNKRIF |
Parental | MEHIHKLKADKARK-KLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
MEHIHKLKADKARK..LL.DQAEARRSKTK.ARK.REE.LQAKKEE.IKTLSKEEETKK | |
Retrocopy | MEHIHKLKADKARK<ELLPDQAEARRSKTKKARKCREECLQAKKEEAIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .22 RPM |
SRP007412_heart | 0 .00 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .02 RPM | 60 .93 RPM |
SRP007412_liver | 0 .00 RPM | 55 .27 RPM |
SRP007412_testis | 0 .00 RPM | 32 .47 RPM |