RetrogeneDB ID:

retro_pvam_918

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_16672:21422..22010(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL19
Ensembl ID:ENSPVAG00000008498
Aliases:None
Description:ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]


Retrocopy-Parental alignment summary:






>retro_pvam_918
CTGAGTATGCTCAGGCTTCAGAAGAAGCTTGCCTCCAGTGTTCTGCGCTGTGGCAAAAAGGAGGTCTGGTTGGATCCTAA
TGGGACCAATGAAATCGCCAATGCCAACTCTTGTTAGCAGATTTGGAAGCTGATCAAAGATGGGCTGATCATCTGGAAGC
CTGTGACTGTCCATTCCTGAGCATGATGCCGGAAAATCACCTTGACCCACAGAAAGGGCAGGCATATGGGCATAGGTAAG
TGAAAGGGTACTGCCAATGCTCGAATGCCTGAGGAGGTAACCTGAATGAGGAGGATGAGAATTCTTCGCCGACTGCTCAG
AAGATACTGTGAATCTAAGAAGATCGACTGCCACATGTATAACAGCCTGTACCTGAAAGTGAAGGGTAACCTATTTAAAA
ACAAGTGGATTCTCATGGAACACACCCACAAGCTGAAGGCAGATAAGGCTCGCAAGAAACTTCTGGCTGACCAAACTGAG
GCCCGCAGATCTAAGATCAAGGAAGCACACAAGTGCTGTGAAGAGTGGTTCTAAGCCAAGAAGGAAGAAATTATCAAGAC
TTTGTCCAAGGAAGAAGAGACCAAGAAA

ORF - retro_pvam_918 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.69 %
Parental protein coverage: 100. %
Number of stop codons detected: 6
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR
.SMLRLQK.LASSVLRCGKK.VWLDPN.TNEIANANS..QI.KLIKDGLII.KPVTVHS.A.CRK.TL..
RetrocopyLSMLRLQKKLASSVLRCGKKEVWLDPNGTNEIANANSC*QIWKLIKDGLIIWKPVTVHS*A*CRKITLTH
ParentalRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME
RKGRHMGIGK.KGTANARMPE.VT.MRRMRILRRLLRRY.ESKKID.HMY.SLYLKVKGN.FKNK.ILME
RetrocopyRKGRHMGIGK*KGTANARMPEEVT*MRRMRILRRLLRRYCESKKIDCHMYNSLYLKVKGNLFKNKWILME
ParentalHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
H.HKLKADKARKKLLADQ.EARRSK.KEA.K..EE...AKKEEIIKTLSKEEETKK
RetrocopyHTHKLKADKARKKLLADQTEARRSKIKEAHKCCEEWF*AKKEEIIKTLSKEEETKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_918 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 163 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000041215 retrocopies
Callithrix jacchus ENSCJAG000000085204 retrocopies
Dasypus novemcinctus ENSDNOG000000197427 retrocopies
Dipodomys ordii ENSDORG000000043301 retrocopy
Equus caballus ENSECAG000000250806 retrocopies
Homo sapiens ENSG0000010829821 retrocopies
Macaca mulatta ENSMMUG000000042352 retrocopies
Mus musculus ENSMUSG0000001740425 retrocopies
Nomascus leucogenys ENSNLEG0000000074819 retrocopies
Pongo abelii ENSPPYG0000000849220 retrocopies
Pteropus vampyrus ENSPVAG00000008498 9 retrocopies
Rattus norvegicus ENSRNOG0000000474137 retrocopies
Sarcophilus harrisii ENSSHAG000000164824 retrocopies
Sus scrofa ENSSSCG000000175093 retrocopies



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