RetrogeneDB ID: | retro_mmus_1591 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:75165206..75165782(+) | ||
Located in intron of: | ENSMUSG00000001870 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084025 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 83.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
.SMLRLQK.LASSVL.CGKKK..LDP..TNEIANANS.QQIRKLIKDGLIIRKPVTVH....CR.NTLA. | |
Retrocopy | VSMLRLQKGLASSVLCCGKKKIRLDPSDTNEIANANSCQQIRKLIKDGLIIRKPVTVH----CRENTLAQ |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME |
..GRHMGIGKR.GTANA.MPEKVTWMRRMRIL.RLLRRY.ESKKIDR.MYHSL.L.VKGNVFKNK.ILME | |
Retrocopy | QQGRHMGIGKREGTANAWMPEKVTWMRRMRILHRLLRRYQESKKIDRRMYHSLCLQVKGNVFKNKWILME |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
HIHKLKADKA.K.LLADQAE..RSKTKEA.K.REER.QAKKEE.IKTLSK.EETKK | |
Retrocopy | HIHKLKADKAHKELLADQAESCRSKTKEAQKCREERVQAKKEEAIKTLSKKEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .22 RPM |
SRP007412_heart | 0 .03 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 60 .93 RPM |
SRP007412_liver | 0 .00 RPM | 55 .27 RPM |
SRP007412_testis | 0 .00 RPM | 32 .47 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_56730 | 106 libraries | 170 libraries | 637 libraries | 134 libraries | 25 libraries |