Parental gene:

RPL19, ENSSSCG00000017509

Aliases:None
Description:ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]
Organism:Pig (Sus scrofa)
Coordinates:12:23482060..23486100(-)


>ENSSSCG00000017509
TACAGTATGCTCAGGCTTCAGAAGAGGCTTGCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAAGTCTGGTTGGACCCCAA
TGAGACTAATGAAATCGCCAACGCCAACTCCCGTCAGCAGATCCGGAAGCTGATCAAAGATGGGCTGATCATCCGGAAGC
CTGTGACTGTCCATTCCCGGGCTCGATGCCGGAAAAACACCCTGGCCCGCCGGAAGGGCAGGCATATGGGCATCGGTAAG
CGGAAGGGTACTGCCAATGCTCGAATGCCTGAGAAGGTAACTTGGATGAGGAGGATGAGAATTCTGCGCCGGCTGCTCAG
AAGATACCGTGAATCTAAGAAGATTGACCGCCACATGTATCACAGTCTGTACCTGAAAGTGAAGGGGAATGTGTTCAAAA
ACAAGCGGATTCTCATGGAGCACATCCACAAGCTGAAGGCGGACAAGGCTCGCAAGAAGCTTCTGGCGGACCAGGCTGAG
GCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGGCTCCAGGCCAAGAAGGAGGAAATCATCAAGAC
TCTGTCCAAGGAGGAAGAGACCAAGAAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 525 .48 RPM
SRP014902_testis 666 .78 RPM
SRP018856_adipose 1144 .71 RPM
SRP018288_kidney 459 .13 RPM
SRP018288_lung 466 .87 RPM
SRP018288_liver 408 .25 RPM
SRP018288_heart 371 .71 RPM
SRP035408_liver 664 .00 RPM
SRP035408_brain 838 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004121 ortholog_one2one 5 retrogenes
retro_amel_1195, retro_amel_1663, retro_amel_451, retro_amel_531, retro_amel_889,
Callithrix jacchus ENSCJAG00000008520 possible_ortholog 4 retrogenes
retro_cjac_131, retro_cjac_220, retro_cjac_32, retro_cjac_64,
Dasypus novemcinctus ENSDNOG00000019742 possible_ortholog 7 retrogenes
retro_dnov_1478, retro_dnov_1897, retro_dnov_2, retro_dnov_2170, retro_dnov_2431, retro_dnov_691, retro_dnov_720,
Dipodomys ordii ENSDORG00000004330 ortholog_one2one 1 retrogene
retro_dord_105,
Equus caballus ENSECAG00000025080 possible_ortholog 6 retrogenes
retro_ecab_104, retro_ecab_319, retro_ecab_351, retro_ecab_456, retro_ecab_497, retro_ecab_905,
Homo sapiens ENSG00000108298 ortholog_one2one 21 retrogenes
retro_hsap_1085, retro_hsap_1802, retro_hsap_2072, retro_hsap_2157, retro_hsap_2209, retro_hsap_2406, retro_hsap_2651, retro_hsap_2679, retro_hsap_2850, retro_hsap_3012, retro_hsap_3155, retro_hsap_3274, retro_hsap_3401, retro_hsap_3885, retro_hsap_3933, retro_hsap_399, retro_hsap_3991, retro_hsap_4219, retro_hsap_4680, retro_hsap_4774, retro_hsap_739,
Macaca mulatta ENSMMUG00000004235 possible_ortholog 2 retrogenes
retro_mmul_283, retro_mmul_63,
Mus musculus ENSMUSG00000017404 ortholog_one2one 25 retrogenes
retro_mmus_1174, retro_mmus_1235, retro_mmus_1248, retro_mmus_1273, retro_mmus_1323, retro_mmus_1397, retro_mmus_1591, retro_mmus_1614, retro_mmus_1699, retro_mmus_1700, retro_mmus_1877, retro_mmus_1885, retro_mmus_1964, retro_mmus_2301, retro_mmus_2688, retro_mmus_2749, retro_mmus_2967, retro_mmus_3110, retro_mmus_3187, retro_mmus_3310, retro_mmus_341, retro_mmus_3413, retro_mmus_507, retro_mmus_571, retro_mmus_600,
Nomascus leucogenys ENSNLEG00000000748 ortholog_one2one 19 retrogenes
retro_nleu_1182, retro_nleu_1570, retro_nleu_1602, retro_nleu_1620, retro_nleu_1889, retro_nleu_2171, retro_nleu_2236, retro_nleu_2284, retro_nleu_2335, retro_nleu_2430, retro_nleu_2446, retro_nleu_2538, retro_nleu_2695, retro_nleu_2702, retro_nleu_2735, retro_nleu_3116, retro_nleu_479, retro_nleu_540, retro_nleu_656,
Pongo abelii ENSPPYG00000008492 possible_ortholog 20 retrogenes
retro_pabe_1546, retro_pabe_1687, retro_pabe_1709, retro_pabe_1815, retro_pabe_2177, retro_pabe_2300, retro_pabe_2320, retro_pabe_2496, retro_pabe_2625, retro_pabe_2799, retro_pabe_2800, retro_pabe_3166, retro_pabe_3278, retro_pabe_3299, retro_pabe_3513, retro_pabe_3635, retro_pabe_3829, retro_pabe_4, retro_pabe_973, retro_pabe_980,
Pteropus vampyrus ENSPVAG00000008498 ortholog_one2one 9 retrogenes
retro_pvam_1191, retro_pvam_1332, retro_pvam_183, retro_pvam_244, retro_pvam_468, retro_pvam_792, retro_pvam_914, retro_pvam_918, retro_pvam_950,
Rattus norvegicus ENSRNOG00000004741 ortholog_one2one 37 retrogenes
retro_rnor_1029, retro_rnor_1039, retro_rnor_1295, retro_rnor_1338, retro_rnor_1405, retro_rnor_1440, retro_rnor_1449, retro_rnor_1478, retro_rnor_1512, retro_rnor_1525, retro_rnor_1558, retro_rnor_1577, retro_rnor_1765, retro_rnor_1766, retro_rnor_1795, retro_rnor_1814, retro_rnor_1860, retro_rnor_1885, retro_rnor_1905, retro_rnor_1907, retro_rnor_1970, retro_rnor_1981, retro_rnor_208, retro_rnor_2169, retro_rnor_2522, retro_rnor_2536, retro_rnor_2708, retro_rnor_2773, retro_rnor_2783, retro_rnor_2921, retro_rnor_2943, retro_rnor_326, retro_rnor_426, retro_rnor_434, retro_rnor_464, retro_rnor_465, retro_rnor_829,
Sarcophilus harrisii ENSSHAG00000016482 ortholog_one2one 4 retrogenes
retro_shar_159, retro_shar_287, retro_shar_317, retro_shar_415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_398 78.50 53.57
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2. retro_sscr_913 78.79 99.49
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3. retro_sscr_1108 78.50 53.57
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Download FASTA sequences of all ENSSSCG00000017509 retrocopies