RetrogeneDB ID: | retro_shar_415 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841806.1:70615..71027(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSSHAG00000016482 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 56.64 % |
Parental protein coverage: | 72.45 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | VTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLL-RRYRESKKIDRHMYHSL |
VTVH..ARC.KN..A..K.RHM..GK.....NA..PE..T.MR.M.ILR.LL..R..E.KK.D.HM.HSL | |
Retrocopy | VTVHACARC*KNIIA*QKERHMSNGK----VNALIPERMTCMRIM-ILRCLL>KRHQEPKKFDCHMHHSL |
Parental | YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEE |
YLK.K.NVF.NK.IL..HI.K.KADK..K..L.DQAEA...KTKE..K..EE..Q.KKEE.IK.LS.... | |
Retrocopy | YLKQKINVFLNKKILIQHIYKFKADKT*KQFLIDQAEAQLTKTKESSKH*EEH*QVKKEEVIKALSRKKI |
Parental | TKK |
.K. | |
Retrocopy | NKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |