RetrogeneDB ID: | retro_sscr_1108 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | GL895054.2:191721..192038(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000022006 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSSSCG00000017509 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 78.5 % |
Parental protein coverage: | 53.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR |
S.LRLQKRLASSVLRCGKKKVWLDP.ET.EIANA.SRQQI.KLIKDGL.I.KP.TVHSRARC.KNTLA.R | |
Retrocopy | SVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLAHR |
Parental | -KGR-HMGIGKRKGTANARMPEKVTWMRRMRILRRLL |
..G...MGIGKRKGTA.A.MP.KVTW...M.ILRRL. | |
Retrocopy | <EGQAYMGIGKRKGTASAGMPKKVTWLQLMKILRRLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 525 .48 RPM |
SRP014902_testis | 0 .00 RPM | 666 .78 RPM |
SRP018288_heart | 0 .00 RPM | 371 .71 RPM |
SRP018288_kidney | 0 .00 RPM | 459 .13 RPM |
SRP018288_liver | 0 .00 RPM | 408 .25 RPM |
SRP018288_lung | 0 .00 RPM | 466 .87 RPM |
SRP018856_adipose | 0 .00 RPM | 1144 .71 RPM |
SRP035408_brain | 0 .00 RPM | 838 .41 RPM |
SRP035408_liver | 0 .00 RPM | 664 .00 RPM |