RetrogeneDB ID: | retro_mmus_2749 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:71683482..71683882(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 87.31 % |
Parental protein coverage: | 67.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKN |
KNTLAR.KGRHMGIGKR.GTAN.RMPEKVTWMRRMRILR.LLR.YRESKKID.HMY.SLYLKVKGNVFKN | |
Retrocopy | KNTLARQKGRHMGIGKRRGTANTRMPEKVTWMRRMRILRQLLRSYRESKKIDHHMYRSLYLKVKGNVFKN |
Parental | KRILMEHIHKLKADKA-RKKL-LADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
KRILMEHIH.LKADKA..K.L.L....EA.RSKTKEARKRREERLQAKKEEIIKTLSKEEETKK | |
Retrocopy | KRILMEHIHRLKADKARKKLL>LTRLSEAHRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .04 RPM | 33 .22 RPM |
SRP007412_heart | 0 .06 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .08 RPM | 60 .93 RPM |
SRP007412_liver | 0 .05 RPM | 55 .27 RPM |
SRP007412_testis | 0 .00 RPM | 32 .47 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_124375 | 141 libraries | 281 libraries | 613 libraries | 34 libraries | 3 libraries |