RetrogeneDB ID: | retro_shar_317 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841305.1:890141..890475(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSSHAG00000016482 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 58.77 % |
Parental protein coverage: | 57.65 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDP-NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLA |
MSM.RLQKRL..SVL.C.KK..WLDP.NET.E....NS..QI.KLIKDGLII.KP..V.S.AR..KN.LA | |
Retrocopy | MSMFRLQKRLTCSVL*CAKK-IWLDP>NETRENIKTNSH*QIQKLIKDGLIIQKPIIVESHARYWKNNLA |
Parental | RRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESK |
..K..H.GI.K.KG..NA..PEKV.......IL..LL.R..ESK | |
Retrocopy | *GKDWHIGIVK*KGASNAKIPEKVI*SM*VKIL-FLLQRHHESK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |