RetrogeneDB ID: | retro_mmus_3110 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:19492935..19493523(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081094 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl19 | ||
Ensembl ID: | ENSMUSG00000017404 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:MGI Symbol;Acc:MGI:98020] |
Percent Identity: | 99.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC.KNTLAR | |
Retrocopy | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCQKNTLAR |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME |
RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME | |
Retrocopy | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK | |
Retrocopy | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 54 .16 RPM |
SRP007412_cerebellum | 0 .04 RPM | 33 .22 RPM |
SRP007412_heart | 0 .03 RPM | 70 .85 RPM |
SRP007412_kidney | 0 .12 RPM | 60 .93 RPM |
SRP007412_liver | 0 .11 RPM | 55 .27 RPM |
SRP007412_testis | 0 .05 RPM | 32 .47 RPM |