RetrogeneDB ID: | retro_sscr_913 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:94720783..94721362(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSSSCG00000017509 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 78.79 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SMLRLQKRL-ASSVLRCGKKKV-WLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLA |
SMLRLQKRL.ASSVL.C.KKK..WLD.NETNEI.NANS.QQI.KLIKD.LII.KPVTVHS.A.C.KNTLA | |
Retrocopy | SMLRLQKRL<ASSVLHCDKKKG<WLDLNETNEITNANSHQQIQKLIKDRLIIPKPVTVHSWA*CQKNTLA |
Parental | RRK-GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRIL |
.....RHMGIGK.K.TANARMP.KVTWMRR.RIL..LLRRY.ESKKID.HMYHSLYLKVKGNVF.NK.I. | |
Retrocopy | HGR<DRHMGIGKWKRTANARMPKKVTWMRRIRILCWLLRRYHESKKIDHHMYHSLYLKVKGNVFQNK*IV |
Parental | MEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
MEHIHKLKADKA..KLL.DQAEA.RSK.KEA.K..EE.L.AKKEEIIKTLSK..ETKK | |
Retrocopy | MEHIHKLKADKAH-KLLVDQAEACRSKIKEACKCPEELL*AKKEEIIKTLSKKGETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 525 .48 RPM |
SRP014902_testis | 0 .00 RPM | 666 .78 RPM |
SRP018288_heart | 0 .00 RPM | 371 .71 RPM |
SRP018288_kidney | 0 .00 RPM | 459 .13 RPM |
SRP018288_liver | 0 .00 RPM | 408 .25 RPM |
SRP018288_lung | 0 .00 RPM | 466 .87 RPM |
SRP018856_adipose | 0 .00 RPM | 1144 .71 RPM |
SRP035408_brain | 0 .00 RPM | 838 .41 RPM |
SRP035408_liver | 0 .00 RPM | 664 .00 RPM |