RetrogeneDB ID: | retro_hsap_3274 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:177482604..177483192(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218227 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSG00000108298 | ||
Aliases: | RPL19, L19 | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 92.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
MSML..QKRLASSVLRCGKKKVWLDP.ETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR | |
Retrocopy | MSMLGPQKRLASSVLRCGKKKVWLDPSETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME |
RKGRH..IG..KGTANARMPEKVTWMRRM.ILRRLLRRYRESKKIDRH.YHSLYLKVKGNVFK.KRILME | |
Retrocopy | RKGRHVAIGEQKGTANARMPEKVTWMRRMTILRRLLRRYRESKKIDRHTYHSLYLKVKGNVFKDKRILME |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
HIHKLKADKARKKLLADQAEARRSKTKEA.K..EERLQAKKEE.IKTLSKEEETKK | |
Retrocopy | HIHKLKADKARKKLLADQAEARRSKTKEAGKCPEERLQAKKEEFIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .34 RPM | 516 .45 RPM |
bodymap2_adrenal | 0 .59 RPM | 693 .61 RPM |
bodymap2_brain | 0 .59 RPM | 128 .03 RPM |
bodymap2_breast | 0 .10 RPM | 337 .42 RPM |
bodymap2_colon | 0 .31 RPM | 559 .54 RPM |
bodymap2_heart | 0 .06 RPM | 177 .80 RPM |
bodymap2_kidney | 0 .25 RPM | 314 .43 RPM |
bodymap2_liver | 0 .06 RPM | 244 .38 RPM |
bodymap2_lung | 0 .28 RPM | 650 .91 RPM |
bodymap2_lymph_node | 0 .53 RPM | 827 .28 RPM |
bodymap2_ovary | 0 .42 RPM | 567 .84 RPM |
bodymap2_prostate | 0 .68 RPM | 843 .80 RPM |
bodymap2_skeletal_muscle | 0 .62 RPM | 579 .48 RPM |
bodymap2_testis | 1 .79 RPM | 375 .55 RPM |
bodymap2_thyroid | 0 .36 RPM | 358 .00 RPM |
bodymap2_white_blood_cells | 0 .41 RPM | 888 .83 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_152838 | 28 libraries | 3 libraries | 41 libraries | 153 libraries | 1604 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .05 RPM |
CEU_NA11843 | 1 .19 RPM |
CEU_NA11930 | 1 .76 RPM |
CEU_NA12004 | 0 .65 RPM |
CEU_NA12400 | 1 .61 RPM |
CEU_NA12751 | 0 .92 RPM |
CEU_NA12760 | 2 .25 RPM |
CEU_NA12827 | 2 .03 RPM |
CEU_NA12872 | 0 .73 RPM |
CEU_NA12873 | 0 .89 RPM |
FIN_HG00183 | 1 .62 RPM |
FIN_HG00277 | 0 .89 RPM |
FIN_HG00315 | 0 .75 RPM |
FIN_HG00321 | 2 .24 RPM |
FIN_HG00328 | 1 .04 RPM |
FIN_HG00338 | 1 .00 RPM |
FIN_HG00349 | 1 .76 RPM |
FIN_HG00375 | 0 .83 RPM |
FIN_HG00377 | 0 .86 RPM |
FIN_HG00378 | 0 .98 RPM |
GBR_HG00099 | 1 .08 RPM |
GBR_HG00111 | 1 .66 RPM |
GBR_HG00114 | 0 .97 RPM |
GBR_HG00119 | 1 .17 RPM |
GBR_HG00131 | 1 .72 RPM |
GBR_HG00133 | 1 .50 RPM |
GBR_HG00134 | 1 .16 RPM |
GBR_HG00137 | 4 .87 RPM |
GBR_HG00142 | 1 .00 RPM |
GBR_HG00143 | 0 .67 RPM |
TSI_NA20512 | 1 .33 RPM |
TSI_NA20513 | 0 .77 RPM |
TSI_NA20518 | 1 .67 RPM |
TSI_NA20532 | 1 .09 RPM |
TSI_NA20538 | 0 .97 RPM |
TSI_NA20756 | 2 .15 RPM |
TSI_NA20765 | 0 .85 RPM |
TSI_NA20771 | 1 .62 RPM |
TSI_NA20786 | 0 .84 RPM |
TSI_NA20798 | 1 .37 RPM |
YRI_NA18870 | 1 .73 RPM |
YRI_NA18907 | 0 .76 RPM |
YRI_NA18916 | 1 .18 RPM |
YRI_NA19093 | 0 .68 RPM |
YRI_NA19099 | 1 .25 RPM |
YRI_NA19114 | 0 .89 RPM |
YRI_NA19118 | 1 .43 RPM |
YRI_NA19213 | 0 .81 RPM |
YRI_NA19214 | 0 .61 RPM |
YRI_NA19223 | 0 .52 RPM |