RetrogeneDB ID: | retro_etel_1192 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_225803:8280..8786(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 67.98 % |
Parental protein coverage: | 53.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPALGTDGDK |
KNRVIGS.CNLD.A.F.YL......V..LSCH.WVLGEH.D...PV.S.VNVAGVSLKNLHP.L..DG.K | |
Retrocopy | KNRVIGSYCNLDLATFYYL----IRVQALSCHRWVLGEHVDFGMPVFSEVNVAGVSLKNLHPVLHNDGAK |
Parental | EQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGINEDVFLSVPCI |
EQW..VHKQVV..AYEVIKLK.YTSW.IGL.V..L.ESIMKNLR.VH.ISTMIKGL...N...F.SVP.I | |
Retrocopy | EQWEKVHKQVVNNAYEVIKLKDYTSWTIGLFVDELEESIMKNLRWVHLISTMIKGLHDLNDNFFISVPSI |
Parental | LGQNGISDVVKVTLTTE-EEARLKKSADTLWGIQKELQ |
.G.NGISD..KVTLT.E.E...LKKSADT....QKEL. | |
Retrocopy | *G*NGISDLEKVTLTPE<EDV*LKKSADT----QKELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |